Sto provando ad installare un contenitore di RCurl per Docker, remix di questo Dockerfile, ma fallimento. Così
Come posso installare RCurl al contenitore Docker?
Dockerfile
$ cat Dockerfile FROM r-base RUN apt-get -y install r-base RUN pip install rpy2 RUN apt-get -y install libcurl4-openssl-dev #setup R configs RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile RUN Rscript -e "install.packages('yhatr')" RUN Rscript -e "install.packages('ggplot2')" RUN Rscript -e "install.packages('plyr')" RUN Rscript -e "install.packages('reshape2')" RUN Rscript -e "install.packages('forecast')" RUN Rscript -e "install.packages('stringr')" RUN Rscript -e "install.packages('lubridate')" RUN Rscript -e "install.packages('randomForest')" RUN Rscript -e "install.packages('rpart')" RUN Rscript -e "install.packages('e1071')" RUN Rscript -e "install.packages('kknn')" RUN Rscript -e "install.packages('RCurl')" RUN Rscript -e "install.packages('rjson')"Errore di installazione di Docker
trying URL 'https://cran.rstudio.com/src/contrib/RCurl_1.95-4.8.tar.gz' Content type 'application/x-gzip' length 916934 bytes (895 KB) ================================================== downloaded 895 KB * installing *source* package 'bitops' ... ** package 'bitops' successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bit-ops.c -o bit-ops.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cksum.c -o cksum.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o bitops.so bit-ops.o cksum.o -L/usr/lib/R/lib -lR installing to /usr/local/lib/R/site-library/bitops/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (bitops) * installing *source* package 'RCurl' ... ** package 'RCurl' successfully unpacked and MD5 sums checked checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package 'RCurl' * removing '/usr/local/lib/R/site-library/RCurl' The downloaded source packages are in '/tmp/RtmpJrfUvL/downloaded_packages' Warning message: In install.packages("RCurl") : installation of package 'RCurl' had non-zero exit status ---> b8de6bc67379 Removing intermediate container e8c17d0306ef
Dirk suggerì di installare da binari che si riferivano a build hadleyvers in rocker qui :
Docker che fornisce l'ecosistema di package RStudio + rmarkdown / pandoc / latex + R da Hadley Wickham
quindi stiamo ricevendo un sacco di extra oltre al Basic RCurl .
Di seguito è ansible creare il contenitore dall'image docker e avviarlo con una directory dal proprio host, lasciandoti in shell interattivo, bash. Là è ansible aprire la session R con $ R nella row di command in cui funziona il command install.packages('RCurl') .
$ docker build -t 20170127_r . $ docker run -v ~/Desktop/20161213_project/:/project -it 20170127_r bash`
Dockerfile
#R with RCurl #https://github.com/rocker-org/hadleyverse/blob/master/Dockerfile # FROM rocker/verse MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" [email protected] ## Install some external dependencies. RUN apt-get update \ && apt-get install -y --no-install-recommends \ default-jdk \ default-jre \ icedtea-netx \ libbz2-dev \ libcairo2-dev \ libgdal-dev \ libicu-dev \ liblzma-dev \ libproj-dev \ libgeos-dev \ libgsl0-dev \ librdf0-dev \ librsvg2-dev \ libv8-dev \ libxcb1-dev \ libxdmcp-dev \ libxslt1-dev \ libxt-dev \ mdbtools \ netcdf-bin \ && . /etc/environment \ && install2.r -e -r $MRAN rJava \ && R CMD javareconf \ && apt-get clean \ && rm -rf /var/lib/apt/lists/ \ && rm -rf /tmp/downloaded_packages/ /tmp/*.rds ## tidyverse, devtools and related R packages already inherited from rocker/verse ## httr authentication uses this port EXPOSE 1410 ENV HTTR_LOCALHOST 0.0.0.0
where non è chiaro quali pacchetti sono sufficienti per l'installazione RCurl .